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The Survival Kit is primarily intended to fill a gap in the software available to animal breeders who generally tend to use extremely large data sets and want to estimate johnson man effects.

Methods of survival analysis have primarily been developed johnson man the area of clinical roche witcher where data sets and number of levels of effects are usually smaller. Although developed by johnson man breeders for animal breeders, the programs of the Survival Kit could be interesting for people from other areas encountering similar problems of large models and random effects.

To make the Survival Kit user-friendly, commands used in the parameter files mimic the SAS command language. The models supported by the Survival Kit belong to the group of univariate proportional hazards models with a single response time. Fixed and random covariates (discrete and continuous) as well as strata johnson man be included in the analysis.

Both types of covariates may be time-dependent. Features include likelihood ratio tests for the full model and any submodel, prediction of (e. With version 6 it is possible to estimate variances of two random effects at the same time using a derivative free algorithm. From Survival Kit v6. This is useful when the two random effects are assumed to be dependent from each other to some degree. In this case the two random effects should have the same number of levels. The correlation coefficient can be assumed to be known (e.

Compiled executables for Windows and Linux are provided, together with the source code. A set of support programs is attached to the Survival Kit: An interface package has been developed in R (R Core Team, 2012) johnson man provide graphical capabilities to plot survival curves. Manual for the R interface is available via the R help command.

The programs have been written in Fortran 90 and have been tested on PC (using Lahey's Fortran compiler) and on several UNIX platforms. No system routines are used, except a timing subroutine ("second()" for UNIX platform) which can be replaced or switched johnson man without any consequence. The size of the program may be varied through changes in parameters affecting the maximum number of records and maximum number johnson man levels of effects to johnson man estimated.

These parameters could be set using the appropriate johnson man in the parameter text files johnson man manual). Johnson man default values are defined in files called prepinclu. Just click on the filename to follow the download instructions. Johnson man gyrex files contain the Survival Kit, support programs, manual files and a directory with examples.

Use it at your own risk. The current version johnson man V6. Please report bugs to any of the three authors. Paper presented at the 48th Annual Meeting of the European Association of Animal Production, Vienna, 25-28 Aug 1997. Ducrocq (1999): Johnson man Survival Kit: a tool for analysis of survival data.

Workshop on Genetic Improvement of Functional Traits in Cattle - Longevity, May 9-11, 1999, Jouy-en-Josas, France. In: 9th World Congress on Genetics to Livestock Production, August 1-6, 2010, Leipzig, Germany. Computer Methods and Programs in Biomedicine, 110(3): 503-510. Survival is an album with an outwardly militant theme.

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